PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010097048.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family HSF
Protein Properties Length: 369aa    MW: 41404.2 Da    PI: 4.4782
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010097048.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.41.1e-33471382102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k++e++ed+ +++++sws   nsf+v+d+++f++ +Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++         weF++  F +g+++ll++
  XP_010097048.1  47 FLTKTFEMVEDPLTDTIVSWSIARNSFIVWDSHKFSTLLLPRYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANGGFLAGQRHLLKT 132
                     9********************888*****************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     ikr+++
  XP_010097048.1 133 IKRRRN 138
                     ***987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.22E-3243136IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.3E-3543136IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.4E-5743136IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-184770IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.0E-3047136IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-188597IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434086110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-1898110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MDREKITVKE ELEETLVNVG GSSASSSSSN VSPQPMEGLH EMGPPPFLTK TFEMVEDPLT  60
DTIVSWSIAR NSFIVWDSHK FSTLLLPRYF KHSNFSSFVR QLNTYGFRKV DPDRWEFANG  120
GFLAGQRHLL KTIKRRRNVS SSIQQSQEAC VEVGQFGLEC ELERLKRDRK VLMAEILRLR  180
QQQQDSREKA MAMEGRLLST ERKQQHMMNF LAKALSNSTF VNQFAQRNAE RKWLNEVGTG  240
RKRRVIASPS LENLQGQEAV GEAGLEPEME TLFSAAMDNE SSSGINDPIA SSVDTASGDG  300
GGNLDSVNES IWQELLSDDM IGGNQEEEVA LVDESEPDVE VEDLVAQTDD WGDDLSDLVD  360
QMGYLRSKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-244513627129Heat shock factor protein 1
5d5v_B3e-244513627129Heat shock factor protein 1
5d5v_D3e-244513627129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129135LKTIKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010097048.10.0Heat shock factor protein HSF30
SwissprotP411521e-132HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLW9RE180.0W9RE18_9R
STRINGPOPTR_0006s24330.11e-162(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82253143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-115heat shock transcription factor A2